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1

[Society of Petroleum Engineers SPE Russian Petroleum Technology Conference - Moscow, Russia (2019-10-22)] SPE Russian Petroleum Technology Conference - Complex Approach to the Design of Acid Treatment of Carbonate Reservoirs

Trushin, Yuri, Aleshchenko, Anton, Danilin, Kirill, Folomeev, Alexey, Haydar, Azat, Gorin, Alexander, Sharifullin, Andrey

File:

PDF, 1.51 MB

2

Optimizing the genetic prediction of the eye and hair color for North Eurasian populations

Balanovska, Elena, Lukianova, Elena, Kagazezheva, Janet, Maurer, Andrey, Leybova, Natalia, Agdzhoyan, Anastasiya, Gorin, Igor, Petrushenko, Valeria, Zhabagin, Maxat, Pylev, Vladimir, Kostryukova, Elen

Journal:

Year:

2020

File:

PDF, 2.80 MB

2020

3

PanFP: pangenome-based functional profiles for microbial communities

Jun, Se-Ran, Robeson, Michael S., Hauser, Loren J., Schadt, Christopher W., Gorin, Andrey A.

Journal:

BMC Research Notes

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

4

Experimental Studies of Wear Resistance of Anti-Friction Coatings of Bimetal Fluid-Film Bearings

Rodichev, A.Yu., Babin, Alexander, Gorin, Andrey

Journal:

Materials Science Forum

Year:

2019

Language:

english

File:

PDF, 779 KB

english, 2019

5

[Society of Petroleum Engineers SPE Russian Petroleum Technology Conference - Moscow, Russia (2019-10-22)] SPE Russian Petroleum Technology Conference - Complex Approach to the Design of Acid Treatment of Carbonate Reservoirs (Russian)

Trushin, Yuri, Aleshchenko, Anton, Danilin, Kirill, Folomeev, Alexey, Haydar, Azat, Gorin, Alexander, Sharifullin, Andrey

File:

PDF, 1.02 MB

6

Study of the Micro-Hardness of Anti-Friction Coating after Plastic Deformation in Bimetallic Sliding Bearings

Rodichev, Alexey Yu., Gorin, Andrey V., Tokmakova, Maria A.

Journal:

Solid State Phenomena

Year:

2020

File:

PDF, 2.22 MB

2020

7

Characteristics of point focusing image intensifiers and hybrid PMs as elements of multichannel particle detectors

Alexander M. Gorin, Georgiy M. Lyapunov, Andrey M. Medvedkov, Vladimir I. Rykalin, Victor V. Rykalin

Journal:

Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment

Year:

1991

Language:

english

File:

PDF, 304 KB

english, 1991

8

A decentralized parallel implementation for parallel tempering algorithm

Yaohang Li, Michael Mascagni, Andrey Gorin

Journal:

Parallel Computing

Year:

2009

Language:

english

File:

PDF, 458 KB

english, 2009

9

Hybrid parallel tempering and simulated annealing method

Yaohang Li, Vladimir A. Protopopescu, Nikita Arnold, Xinyu Zhang, Andrey Gorin

Journal:

Applied Mathematics and Computation

Year:

2009

Language:

english

File:

PDF, 1.48 MB

english, 2009

10

Accelerated simulated tempering

Yaohang Li, Vladimir A Protopopescu, Andrey Gorin

Journal:

Physics Letters A

Year:

2004

Language:

english

File:

PDF, 543 KB

english, 2004

11

RNA architecture dictates the conformations of a bound peptide

Xiaomei Ye, Andrey Gorin, Ronnie Frederick, Weidong Hu, Ananya Majumdar, Weijun Xu, George McLendon, Andrew Ellington, Dinshaw J Patel

Journal:

Chemistry & Biology

Year:

1999

Language:

english

File:

PDF, 8.65 MB

english, 1999

12

Protein docking using surface matching and supervised machine learning

Andrew J. Bordner, Andrey A. Gorin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 422 KB

english, 2007

13

A peptide-linkage deletion procedure for estimate of energetic contributions of individual peptide groups in a complex environment: Application to parallel β-Sheets

Haobo Guo, Andrey Gorin, Hong Guo

Journal:

Interdisciplinary Sciences: Computational Life Sciences

Year:

2009

Language:

english

File:

PDF, 326 KB

english, 2009

14

Flexing and folding double helical DNA

Wilma K. Olson, Marla S. Babcock, Andrey Gorin, Guohua Liu, Nancy L. Marky, Jennifer A. Martino, Scott C. Pedersen, A.R. Srinivasan, Irwin Tobias, Timothy P. Westcott, Peisen Zhang

Journal:

Biophysical Chemistry

Year:

1995

Language:

english

File:

PDF, 2.06 MB

english, 1995

15

Solution structure of P22 transcriptional antitermination N peptide–box B RNA complex

Cai, Zhuoping, Gorin, Andrey, Frederick, Ronnie, Ye, Xiaomei, Hu, Weidong, Majumdar, Ananya, Kettani, Abdelali, Patel, Dinshaw J.

Journal:

Natural Structural Biology

Year:

1998

File:

PDF, 2.55 MB

1998

16

Deep penetration of an α-helix into a widened RNA major groove in the HIV-1 rev peptide–RNA aptamer complex

Ye, Xiaomei, Gorin, Andrey, Ellington, Andrew D., Patel, Dinshaw J.

Journal:

Natural Structural Biology

Year:

1996

File:

PDF, 1.02 MB

1996

17

Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples

Feng Jiang, Andrey Gorin, Weidong Hu, Ananya Majumdar, Scott Baskerville, Weijun Xu, Andrew Ellington, Dinshaw J Patel

Journal:

Year:

1999

Language:

english

File:

PDF, 1.32 MB

english, 1999

18

Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces

Andrew J Bordner, Andrey A Gorin

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 547 KB

english, 2008

19

B-DNA Twisting Correlates with Base-pair Morphology

Andrey A. Gorin, Victor B. Zhurkin, Wilma K.

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 763 KB

english, 1995

20

Solution structure of a Na cation stabilized DNA quadruplex containing G·G·G·G and G·C·G·C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA

Abdelali Kettani, Serge Bouaziz, Andrey Gorin, Hong Zhao, Roger A Jones, Dinshaw J Patel

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 795 KB

english, 1998

21

DNA stretching and compression: large-scale simulations of double helical structures

Konstantin M. Kosikov, Andrey A. Gorin, Victor B. Zhurkin, Wilma K. Olson

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 814 KB

english, 1999

22

A dimeric DNA interface stabilized by stacked A · (G · G · G · G) · A hexads and coordinated monovalent cations

Abdelali Kettani, Andrey Gorin, Ananya Majumdar, Thomas Hermann, Eugene Skripkin, Hong Zhao, Roger Jones, Dinshaw J. Patel

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 651 KB

english, 2000

23

A two-stranded template-based approach to G·(C-A) triad formation: designing novel structural elements into an existing DNA framework

Abdelali Kettani, Gautam Basu, Andrey Gorin, Ananya Majumdar, Eugene Skripkin, Dinshaw J. Patel

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 783 KB

english, 2000

24

Accomodation of S-cis-tamoxifen-N2-guanine adduct within a bent and widened DNA minor groove

Sakurako Shimotakahara, Andrey Gorin, Alexander Kolbanovskiy, Abdelali Kettani, Brian E Hingerty, Shantu Amin, Suse Broyde, Nicholas Geacintov, Dinshaw J Patel

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 745 KB

english, 2000

25

V-shaped scaffold: a new architectural motif identified in an A·(G·G·G·G) pentad-containing dimeric DNA quadruplex involving stacked G(anti)·G(anti)·G(anti)·G(syn) tetrads

Na Zhang, Andrey Gorin, Ananya Majumdar, Abdelali Kettani, Natalya Chernichenko, Eugene Skripkin, Dinshaw J. Patel

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 771 KB

english, 2001

26

Dimeric DNA quadruplex containing major groove-aligned A·T·A·T and G·C·G·C tetrads stabilized by inter-subunit Watson-Crick A·T and G·C pairs

Na Zhang, Andrey Gorin, Ananya Majumdar, Abdelali Kettani, Natalya Chernichenko, Eugene Skripkin, Dinshaw J. Patel

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 528 KB

english, 2001

27

Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings

Hashim M Al-Hashimi, Yuying Gosser, Andrey Gorin, Weidong Hu, Ananya Majumdar, Dinshaw J Patel

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 371 KB

english, 2002

28

Towards Structural Genomics of RNA: Rapid NMR Resonance Assignment and Simultaneous RNA Tertiary Structure Determination Using Residual Dipolar Couplings

Hashim M. Al-Hashimi, Andrey Gorin, Ananya Majumdar, Yuying Gosser, Dinshaw J. Patel

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 702 KB

english, 2002

29

Regulation of cholesterol biosynthesis and cancer signaling

Gorin, Andrey, Gabitova, Linara, Astsaturov, Igor

Journal:

Current Opinion in Pharmacology

Year:

2012

Language:

english

File:

PDF, 320 KB

english, 2012

30

Three-Dimensional Model for Slipped Loop RNA

Farutin, Victor A., Gorin, Andrey A., Zdobnov, Evgenyi M., Ivanov, Valery I.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1997

Language:

english

File:

PDF, 1.69 MB

english, 1997

31

Stabilization of a Transition-State Analogue at the Active Site of Yeast Cytosine Deaminase: Importance of Proton Transfers

Xu, Qin, Guo, Haobo, Gorin, Andrey, Guo, Hong

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 290 KB

english, 2007

32

DNA Sequence-Dependent Deformability Deduced from Protein-DNA Crystal Complexes

Wilma K. Olson, Andrey A. Gorin, Xiang-Jun Lu, Lynette M. Hock and Victor B. Zhurkin

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.89 MB

english, 1998

33

Solution Structure of the Aminofluorene-Stacked Conformer of the syn [AF]-C 8 -dG Adduct Positioned at a Template-Primer Junction †,‡

Mao, Bing, Gu, Zhengtian, Gorin, Andrey, Hingerty, Brian E., Broyde, Suse, Patel, Dinshaw J.

Journal:

Year:

1997

Language:

english

File:

PDF, 663 KB

english, 1997

34

Bending of DNA by Asymmetric Charge Neutralization: All-Atom Energy Simulations †

Kosikov, Konstantin M., Gorin, Andrey A., Lu, Xiang-Jun, Olson, Wilma K., Manning, Gerald S.

Journal:

Journal of the American Chemical Society

Year:

2002

Language:

english

File:

PDF, 377 KB

english, 2002

35

Solution Structure of the (+)- cis - anti -Benzo[ a ]pyrene-dA ([BP]dA) Adduct Opposite dT in a DNA Duplex †

Mao, Bing, Gu, Zhentian, Gorin, Andrey, Chen, Junxin, Hingerty, Brian E., Amin, Shantu, Broyde, Suse, Geacintov, Nicholas E., Patel, Dinshaw J.

Journal:

Year:

1999

Language:

english

File:

PDF, 201 KB

english, 1999

36

Alignment of the HTLV−I Rex Peptide Bound to Its Target RNA Aptamer from Magnetic Field-Induced Residual Dipolar Couplings and Intermolecular Hydrogen Bonds

Al-Hashimi, Hashim M., Gorin, Andrey, Majumdar, Ananya, Patel, Dinshaw J.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 103 KB

english, 2001

37

Solution Structure of the N -(Deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) Adduct Opposite dA in a DNA Duplex †

Gu, Zhengtian, Gorin, Andrey, Krishnasamy, Ramji, Hingerty, Brian E., Basu, Ashis K., Broyde, Suse, Patel, Dinshaw J.

Journal:

Year:

1999

Language:

english

File:

PDF, 220 KB

english, 1999

38

Field- and Phage-Induced Dipolar Couplings in a Homodimeric DNA Quadruplex: Relative Orientation of G·(C−A) Triad and G-Tetrad Motifs and Direct Determination of C2 Symmetry Axis Orientation

Al-Hashimi, Hashim M., Majumdar, Ananya, Gorin, Andrey, Kettani, Abdelali, Skripkin, Eugene, Patel, Dinshaw J.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 195 KB

english, 2001

39

Solution Conformation of the (−)- trans - anti -[BP]dG Adduct Opposite a Deletion Site in a DNA Duplex: Intercalation of the Covalently Attached Benzo[ a ]pyrene into the Helix with Base Displacement of the Modified Deoxyguanosine into the Minor Groove †

Feng, Binbin, Gorin, Andrey, Kolbanovskiy, Alexander, Hingerty, Brian E., Geacintov, Nicholas E., Broyde, Suse, Patel, Dinshaw J.

Journal:

Year:

1997

Language:

english

File:

PDF, 266 KB

english, 1997

40

Solution Structure of the Aminofluorene-Intercalated Conformer of the syn [AF]-C 8 -dG Adduct Opposite a −2 Deletion Site in the Nar I Hot Spot Sequence Context †,‡

Mao, Bing, Gorin, Andrey, Gu, Zhengtian, Hingerty, Brian E., Broyde, Suse, Patel, Dinshaw J.

Journal:

Year:

1997

Language:

english

File:

PDF, 279 KB

english, 1997

41

Solution Structures of Aminofluorene [AF]-Stacked Conformers of the syn [AF]−C 8 -dG Adduct Positioned Opposite dC or dA at a Template-Primer Junction †

Gu, Zhengtian, Gorin, Andrey, Hingerty, Brian E., Broyde, Suse, Patel, Dinshaw J.

Journal:

Year:

1999

Language:

english

File:

PDF, 270 KB

english, 1999

42

Structural Alignment of the (+)- trans-anti -Benzo[ a ]pyrene-dG Adduct Positioned Opposite dC at a DNA Template−Primer Junction †

Feng, Binbin, Gorin, Andrey, Hingerty, Brian E., Geacintov, Nicholas E., Broyde, Suse, Patel, Dinshaw J.

Journal:

Year:

1997

Language:

english

File:

PDF, 316 KB

english, 1997

43

Nuclear Magnetic Resonance Solution Structures of Covalent Aromatic Amine−DNA Adducts and Their Mutagenic Relevance

Patel, Dinshaw J., Mao, Bing, Gu, Zhengtian, Hingerty, Brian E., Gorin, Andrey, Basu, Ashis K., Broyde, Suse

Journal:

Chemical Research in Toxicology

Year:

1998

Language:

english

File:

PDF, 298 KB

english, 1998

44

Protein Dynamics and Enzymatic Catalysis: Investigating the Peptidyl−Prolyl Cis−Trans Isomerization Activity of Cyclophilin A †

Agarwal, Pratul K., Geist, Al, Gorin, Andrey

Journal:

Year:

2004

Language:

english

File:

PDF, 683 KB

english, 2004

45

Determining Stoichiometry in Homomultimeric Nucleic Acid Complexes Using Magnetic Field Induced Residual Dipolar Couplings

Al-Hashimi, Hashim M., Tolman, Joel R., Majumdar, Ananya, Gorin, Andrey, Patel, Dinshaw J.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 34 KB

english, 2001

46

Carbon Sequestration in Synechococcus Sp.: From Molecular Machines to Hierarchical Modeling

Heffelfinger, Grant S., Martino, Anthony, Gorin, Andrey, Xu, Ying, Rintoul, Mark D., Geist, Al, Al-Hashimi, Hashim M., Davidson, George S., Faulon, Jean Loup, Frink, Laurie J., Haaland, David M., Hart

Journal:

Omics A Journal of Integrative Biology

Year:

2002

Language:

english

File:

PDF, 485 KB

english, 2002

47

The Influence of Hydroxyapatite and Calcium Carbonate Microparticles on the Mechanical Properties of Nonwoven Composite Materials Based on Polycaprolactone

Metwally, Hassan A., Ardazishvili, Roman V., Severyukhina, Alexandra N., Zaharevich, Andrey M., Skaptsov, Alexander A., Venig, Sergey B., Sukhorukov, Gleb B, Gorin, Dmitry A.

Journal:

Year:

2015

Language:

english

File:

PDF, 841 KB

english, 2015

48

Optimal Construction of Theoretical Spectra for MS/MS Spectra Identification

Fridman, Tema, Protopopescu, Vladimir, Hurst, Greg, Borziak, Andrei, Gorin, Andrey

Journal:

Omics A Journal of Integrative Biology

Year:

2005

Language:

english

File:

PDF, 109 KB

english, 2005

49

Composite Magnetite and Protein Containing CaCO3 Crystals. External Manipulation and Vaterite→Calcite Recrystallization-Mediated Release Performance

Sergeeva, Alena Sergeevna, Sergeev, Roman, Lengert, Ekaterina, Zakharevich, Andrey, Parakhonskiy, Bogdan, Gorin, Dmitry A., Sergeev, Sergey, Volodkin, Dmitry

Journal:

ACS Applied Materials & Interfaces

Year:

2015

Language:

english

File:

PDF, 7.13 MB

english, 2015

50

Endogenous Sterol Metabolites Regulate Growth of EGFR/KRAS-Dependent Tumors via LXR

Gabitova, Linara, Restifo, Diana, Gorin, Andrey, Manocha, Kunal, Handorf, Elizabeth, Yang, Dong-Hua, Cai, Kathy Q., Klein-Szanto, Andres J., Cunningham, David, Kratz, Lisa E., Herman, Gail E., Golemis

Journal:

Year:

2015

Language:

english

File:

PDF, 2.99 MB

english, 2015